ESBTL::Molecular_chain< System > Class Template Reference

#include <molecular_system.h>

List of all members.

Public Types
typedef System::Residue	Residue
typedef Residue::Atom	Atom
typedef std::map< std::pair < int, char >, Residue >	Residue_container
typedef System::Model	Model
typedef internal::Residues_iterator_from_chain < Self, true >	Residues_const_iterator
typedef internal::Residues_iterator_from_chain < Self, false >	Residues_iterator
typedef internal::Atoms_iterator_from_chain < Self, true >	Atoms_const_iterator
typedef internal::Atoms_iterator_from_chain < Self, false >	Atoms_iterator
Public Member Functions
template<class Line_format >
	Molecular_chain (const Line_format &line_format, const std::string &line, const Model &mod)
	Molecular_chain (char id, const Model &mod)
const Model &	model () const
template<class Line_format >
Residue &	get_or_create_residue (const Line_format &line_format, const std::string &line)
Residue &	get_or_create_residue (const std::string &resname, int ressn, char insc)
const Residue &	get_residue (int ressn, char insc=' ') const
const System::Atom	get_atom (int ressn, char insc, unsigned atom_sn) const
size_t	number_of_residues () const
size_t	number_of_atoms () const
Residues_iterator	residues_begin ()
Residues_iterator	residues_end ()
Residues_const_iterator	residues_begin () const
Residues_const_iterator	residues_end () const
Atoms_iterator	atoms_begin ()
Atoms_iterator	atoms_end ()
Atoms_const_iterator	atoms_begin () const
Atoms_const_iterator	atoms_end () const
Static Public Member Functions
static const Residue &	dereference (typename Residue_container::const_iterator it)
static Residue &	dereference (typename Residue_container::iterator it)

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Detailed Description

template<class System>
class ESBTL::Molecular_chain< System >

A class representing a chain.

Template Parameters:

System

is a system (like ESBTL::Molecular_system for example).

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Member Typedef Documentation

template<class System>

typedef Residue::Atom ESBTL::Molecular_chain< System >::Atom

template<class System>

typedef System::Model ESBTL::Molecular_chain< System >::Model

template<class System>

typedef System::Residue ESBTL::Molecular_chain< System >::Residue

template<class System>

typedef std::map<std::pair<int,char>,Residue> ESBTL::Molecular_chain< System >::Residue_container

---

Constructor & Destructor Documentation

template<class System>

template<class Line_format >

ESBTL::Molecular_chain< System >::Molecular_chain	(	const Line_format &	line_format,
		const std::string &	line,
		const Model &	mod
	)		[inline]

template<class System>

ESBTL::Molecular_chain< System >::Molecular_chain	(	char	id,
		const Model &	mod
	)		[inline]

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Member Function Documentation

template<class System>

static Residue& ESBTL::Molecular_chain< System >::dereference

(

typename Residue_container::iterator

it

)

[inline, static]

template<class System>

static const Residue& ESBTL::Molecular_chain< System >::dereference

(

typename Residue_container::const_iterator

it

)

[inline, static]

template<class System>

const System::Atom ESBTL::Molecular_chain< System >::get_atom	(	int	ressn,
		char	insc,
		unsigned	atom_sn
	)		const [inline]

template<class System>

template<class Line_format >

Residue& ESBTL::Molecular_chain< System >::get_or_create_residue	(	const Line_format &	line_format,
		const std::string &	line
	)		[inline]

template<class System>

Residue& ESBTL::Molecular_chain< System >::get_or_create_residue	(	const std::string &	resname,
		int	ressn,
		char	insc
	)		[inline]

template<class System>

const Residue& ESBTL::Molecular_chain< System >::get_residue	(	int	ressn,
		char	insc = ' '
	)		const [inline]

template<class System>

const Model& ESBTL::Molecular_chain< System >::model

(

)

const [inline]

template<class System>

size_t ESBTL::Molecular_chain< System >::number_of_atoms

(

)

const [inline]

template<class System>

size_t ESBTL::Molecular_chain< System >::number_of_residues

(

)

const [inline]

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The documentation for this class was generated from the following file:

• molecular_system.h